* using log directory 'd:/Rcompile/CRANpkg/local64/2.11/SNPassoc.Rcheck'
* using R version 2.11.1 Patched (2010-07-29 r52657)
* using session charset: ISO8859-1
* checking for file 'SNPassoc/DESCRIPTION' ... OK
* this is package 'SNPassoc' version '1.6-0'
* package encoding: latin1
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SNPassoc' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: LD.Rd:69-71: Dropping empty section \examples
prepare_Rd: plotWGassociation.Rd:64-66: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... ERROR
Running examples in 'SNPassoc-Ex.R' failed.
The error most likely occurred in:

> ### * GenomicControl
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: GenomicControl
> ### Title: Population substructure
> ### Aliases: GenomicControl
> ### Keywords: utilities
> 
> ### ** Examples
> 
> 
> data(SNPs) 
> datSNP<-setupSNP(SNPs,6:40,sep="")
> res<-scanWGassociation(casco,datSNP,model=c("do","re","log-add"))
Be patient. The program is computing ... 
The program took 0.01 seconds 
> 
> # Genomic Control 
> resCorrected<-GenomicControl(res)

lambda:
    dominant    recessive log-additive 
          NA           NA    0.1219302 
> plot(resCorrected)
Error in xy.coords(x, y, xlabel, ylabel, log) : 
  'x' and 'y' lengths differ
Calls: plot ... plot.WGassociation -> plot -> plot.default -> xy.coords
Execution halted