* using log directory 'd:/Rcompile/CRANpkg/local/2.15/SoPhy.Rcheck' * using R Under development (unstable) (2012-02-07 r58290) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'SoPhy/DESCRIPTION' ... OK * this is package 'SoPhy' version '1.0.40' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'SoPhy' can be installed ... ERROR Installation failed. The installation logfile: * installing *source* package 'SoPhy' ... ** package 'SoPhy' successfully unpacked and MD5 sums checked ** libs *** arch - i386 make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/local/2.15/SoPhy/src-i386' gfortran -O3 -mtune=core2 -c INPUT2.f -o INPUT2.o gfortran -O3 -mtune=core2 -c MATERIAL2.f -o MATERIAL2.o gfortran -O3 -mtune=core2 -c ORTHOFEM.f -o ORTHOFEM.o gfortran -O3 -mtune=core2 -c OUTPUT2.f -o OUTPUT2.o gfortran -O3 -mtune=core2 -c PCK.f -o PCK.o gfortran -O3 -mtune=core2 -c SINK2.f -o SINK2.o gfortran -O3 -mtune=core2 -c SOLUTE2.f -o SOLUTE2.o gfortran -O3 -mtune=core2 -c SWMS_2D.f -o SWMS_2D.o gfortran -O3 -mtune=core2 -c TIME2.f -o TIME2.o gfortran -O3 -mtune=core2 -c WATFLOW2.f -o WATFLOW2.o gfortran -O3 -mtune=core2 -c analytic.f -o analytic.o g++ -I"d:/RCompile/recent/R/include" -DNDEBUG -I"d:/Rcompile/CRANpkg/extralibs215/local215/include" -O2 -Wall -mtune=core2 -c auxiliary.cc -o auxiliary.o g++ -I"d:/RCompile/recent/R/include" -DNDEBUG -I"d:/Rcompile/CRANpkg/extralibs215/local215/include" -O2 -Wall -mtune=core2 -c horizon.cc -o horizon.o horizon.cc: In function 'SEXPREC* GetHorizons(SEXP, SEXP)': horizon.cc:405:16: warning: variable 'n' set but not used [-Wunused-but-set-variable] g++ -I"d:/RCompile/recent/R/include" -DNDEBUG -I"d:/Rcompile/CRANpkg/extralibs215/local215/include" -O2 -Wall -mtune=core2 -c read.tiff2rgb.cc -o read.tiff2rgb.o read.tiff2rgb.cc: In function 'SEXPREC* readtiff(SEXP)': read.tiff2rgb.cc:63:7: warning: unused variable 'x' [-Wunused-variable] g++ -I"d:/RCompile/recent/R/include" -DNDEBUG -I"d:/Rcompile/CRANpkg/extralibs215/local215/include" -O2 -Wall -mtune=core2 -c win_linux_aux.cc -o win_linux_aux.o g++ -shared -s -static-libgcc -o SoPhy.dll tmp.def INPUT2.o MATERIAL2.o ORTHOFEM.o OUTPUT2.o PCK.o SINK2.o SOLUTE2.o SWMS_2D.o TIME2.o WATFLOW2.o analytic.o auxiliary.o horizon.o read.tiff2rgb.o win_linux_aux.o -Ld:/RCompile/recent/R/bin/i386 -lRlapack -Ld:/RCompile/recent/R/bin/i386 -lRblas -lgfortran -ltiff -Ld:/Rcompile/CRANpkg/extralibs215/local215/lib/i386 -Ld:/Rcompile/CRANpkg/extralibs215/local215/lib -lgfortran -Ld:/RCompile/recent/R/bin/i386 -lR d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0x26b): undefined reference to `jpeg_destroy' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0x3f4): undefined reference to `jpeg_write_raw_data' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0x6db): undefined reference to `jpeg_finish_compress' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0x815): undefined reference to `jpeg_set_colorspace' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0x842): undefined reference to `jpeg_std_error' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0x893): undefined reference to `jpeg_CreateDecompress' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0x8cb): undefined reference to `jpeg_abort' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0x931): undefined reference to `jpeg_abort' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0x962): undefined reference to `jpeg_std_error' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0x9b3): undefined reference to `jpeg_CreateCompress' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0xb6b): undefined reference to `jpeg_set_defaults' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0xc3b): undefined reference to `jpeg_write_tables' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0xcde): undefined reference to `jpeg_finish_decompress' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0xd2b): undefined reference to `jpeg_read_header' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0xddc): undefined reference to `jpeg_resync_to_restart' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0xe56): undefined reference to `jpeg_resync_to_restart' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0xf3b): undefined reference to `jpeg_start_decompress' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0xf94): undefined reference to `jpeg_read_raw_data' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0x1ecd): undefined reference to `jpeg_set_quality' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0x1f13): undefined reference to `jpeg_suppress_tables' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0x23c3): undefined reference to `jpeg_start_compress' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0x2862): undefined reference to `jpeg_write_scanlines' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_jpeg.o):tif_jpeg.c:(.text+0x29c2): undefined reference to `jpeg_read_scanlines' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_ojpeg.o):tif_ojpeg.c:(.text+0xaba): undefined reference to `jpeg_read_raw_data' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_ojpeg.o):tif_ojpeg.c:(.text+0xb09): undefined reference to `jpeg_CreateDecompress' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_ojpeg.o):tif_ojpeg.c:(.text+0xb49): undefined reference to `jpeg_start_decompress' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_ojpeg.o):tif_ojpeg.c:(.text+0x2005): undefined reference to `jpeg_destroy' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_ojpeg.o):tif_ojpeg.c:(.text+0x291b): undefined reference to `jpeg_read_scanlines' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_ojpeg.o):tif_ojpeg.c:(.text+0x2c21): undefined reference to `jpeg_read_header' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_ojpeg.o):tif_ojpeg.c:(.text+0x2da0): undefined reference to `jpeg_std_error' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_zip.o):tif_zip.c:(.text+0xa7): undefined reference to `inflateEnd' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_zip.o):tif_zip.c:(.text+0xbb): undefined reference to `deflateEnd' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_zip.o):tif_zip.c:(.text+0x153): undefined reference to `deflate' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_zip.o):tif_zip.c:(.text+0x22c): undefined reference to `deflate' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_zip.o):tif_zip.c:(.text+0x301): undefined reference to `deflateReset' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_zip.o):tif_zip.c:(.text+0x385): undefined reference to `deflateInit_' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_zip.o):tif_zip.c:(.text+0x3aa): undefined reference to `inflateEnd' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_zip.o):tif_zip.c:(.text+0x48f): undefined reference to `inflate' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_zip.o):tif_zip.c:(.text+0x4d6): undefined reference to `inflateSync' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_zip.o):tif_zip.c:(.text+0x5e1): undefined reference to `inflateReset' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_zip.o):tif_zip.c:(.text+0x65e): undefined reference to `inflateInit_' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_zip.o):tif_zip.c:(.text+0x684): undefined reference to `deflateEnd' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_zip.o):tif_zip.c:(.text+0x785): undefined reference to `deflateParams' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_pixarlog.o):tif_pixarlog.c:(.text+0x150): undefined reference to `deflateParams' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_pixarlog.o):tif_pixarlog.c:(.text+0x31a): undefined reference to `inflateEnd' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_pixarlog.o):tif_pixarlog.c:(.text+0x351): undefined reference to `deflateEnd' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_pixarlog.o):tif_pixarlog.c:(.text+0x3ac): undefined reference to `deflate' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_pixarlog.o):tif_pixarlog.c:(.text+0xbe9): undefined reference to `deflate' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_pixarlog.o):tif_pixarlog.c:(.text+0x21e2): undefined reference to `deflateReset' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_pixarlog.o):tif_pixarlog.c:(.text+0x22c8): undefined reference to `inflate' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_pixarlog.o):tif_pixarlog.c:(.text+0x2a29): undefined reference to `inflateSync' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_pixarlog.o):tif_pixarlog.c:(.text+0x37f2): undefined reference to `inflateReset' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_pixarlog.o):tif_pixarlog.c:(.text+0x399a): undefined reference to `deflateInit_' d:/Rcompile/CRANpkg/extralibs215/local215/lib/i386/libtiff.a(tif_pixarlog.o):tif_pixarlog.c:(.text+0x3b6e): undefined reference to `inflateInit_' collect2: ld returned 1 exit status make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/local/2.15/SoPhy/src-i386' ERROR: compilation failed for package 'SoPhy' * removing 'd:/Rcompile/CRANpkg/lib/2.15/SoPhy' * restoring previous 'd:/Rcompile/CRANpkg/lib/2.15/SoPhy'