* using log directory 'd:/Rcompile/CRANpkg/local/2.14/cit.Rcheck' * using R version 2.14.1 (2011-12-22) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'cit/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'cit' version '1.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'cit' can be installed ... ERROR Installation failed. The installation logfile: * installing *source* package 'cit' ... ** package 'cit' successfully unpacked and MD5 sums checked ** libs *** arch - i386 make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/local/2.14/cit/src-i386' g++ -I"d:/Rcompile/recent/R-2.14.1/include" -I"d:/Rcompile/CRANpkg/extralibs/local/include" -O2 -Wall -mtune=core2 -c cit_v5.cpp -o cit_v5.o gsl-config: not found g++ -shared -s -static-libgcc -o cit.dll tmp.def cit_v5.o -Ld:/Rcompile/CRANpkg/extralibs/local/lib/i386 -Ld:/Rcompile/CRANpkg/extralibs/local/lib -Ld:/Rcompile/recent/R-2.14.1/bin/i386 -lR gsl-config: not found cit_v5.o:cit_v5.cpp:(.text+0x80f): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x81f): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x82d): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x8f2): undefined reference to `gsl_vector_set' cit_v5.o:cit_v5.cpp:(.text+0x91a): undefined reference to `gsl_vector_set' cit_v5.o:cit_v5.cpp:(.text+0x94d): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x965): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x979): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x9a6): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x9ae): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x9b6): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x9c4): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x9e2): undefined reference to `gsl_stats_tss' cit_v5.o:cit_v5.cpp:(.text+0xa27): undefined reference to `gsl_cdf_fdist_Q' cit_v5.o:cit_v5.cpp:(.text+0xa6e): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xa9d): undefined reference to `gsl_matrix_get' cit_v5.o:cit_v5.cpp:(.text+0xab7): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0xad2): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0xaf2): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0xb06): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0xb18): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xb32): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0xb65): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0xb6d): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0xb7b): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0xb83): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0xb91): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0xbce): undefined reference to `gsl_cdf_fdist_Q' cit_v5.o:cit_v5.cpp:(.text+0xc0c): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xc2c): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0xc3e): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0xc56): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0xc6b): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0xc85): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xca1): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0xcd4): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0xcdc): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0xce4): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0xcf2): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0xd00): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0xd18): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xd4c): undefined reference to `gsl_matrix_get' cit_v5.o:cit_v5.cpp:(.text+0xd66): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0xd81): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0xda1): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0xdf5): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0xe0d): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xe21): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0xe54): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0xe5c): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0xe6a): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0xe72): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0xe80): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0xeb0): undefined reference to `gsl_cdf_fdist_Q' cit_v5.o:cit_v5.cpp:(.text+0xeee): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xf0e): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0xf20): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0xf38): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0xf4d): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0xf67): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xf83): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0xfb6): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0xfbe): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0xfc6): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0xfd4): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0xfe2): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1010): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1028): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1042): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x106f): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x1077): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x107f): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x10af): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x10c5): undefined reference to `gsl_matrix_get' cit_v5.o:cit_v5.cpp:(.text+0x1110): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x11aa): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x11b8): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1254): undefined reference to `gsl_vector_set' cit_v5.o:cit_v5.cpp:(.text+0x1273): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x129a): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x12ac): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x12c4): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x12d9): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x12f3): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x130f): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1342): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x134a): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x1352): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1360): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x136e): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1386): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x13bc): undefined reference to `gsl_matrix_get' cit_v5.o:cit_v5.cpp:(.text+0x13d6): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x13f1): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x1411): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1428): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1440): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1454): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1487): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x148f): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x149d): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x14a5): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x14b3): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x179c): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x17c6): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1815): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1833): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1851): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x18ad): undefined reference to `gsl_vector_set' cit_v5.o:cit_v5.cpp:(.text+0x18cc): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x18f3): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1905): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x191d): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1932): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x194c): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1968): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x199b): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x19a3): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x19ab): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x19b9): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x19c7): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x19df): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1a10): undefined reference to `gsl_matrix_get' cit_v5.o:cit_v5.cpp:(.text+0x1a2a): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1a45): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x1a65): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1a7c): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1a94): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1aa8): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1adb): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x1ae3): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x1af1): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1af9): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1b07): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1c07): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1c15): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1c23): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1c31): undefined reference to `gsl_vector_free' collect2: ld returned 1 exit status make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/local/2.14/cit/src-i386' ERROR: compilation failed for package 'cit' * removing 'd:/Rcompile/CRANpkg/lib/2.14/cit' * restoring previous 'd:/Rcompile/CRANpkg/lib/2.14/cit'